Workshops

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Workshop Requirements

 

 

 

 

 

 

 

 

 

 

XlinkX (Mon, 4th, 3.30 - 5.30 pm, Adam-von-Trott Hall)

Cross-linking mass spectrometry data analysis with XlinkX embedded in Proteome Discoverer - Richard Scheltema

Requirements: Own laptop recommended but not required. 

xi and xiVIEW (Sun, 3rd, 1.00 - 3.15 pm, Adam-von-Trott Hall)

xi: Crosslinking Mass-Spectrometry with xi - Going from Raw-Files to Confident Identifications - Lutz Fischer

Requirements: Windows laptop is recommended.

xiVIEW: xiVIEW: Interactive visualisation and exploration of crosslinking data - Martin Graham

Requirements: A computer with a modem HTML5-compatible browser is necessary, Chrome is recommended.

MeroX (Tue, 5th, 3.40 - 5.40 pm, Adam-von-Trott Hall)

MeroX 2.0 - MS/MS-cleavable protein-protein XL-MS data analysis - Michael Götze, Claudio Iacobucci & Andrea Sinz

Requirements: Please bring a laptop that has Java installed.

HADDOCK/DisVis (Sun, 3rd, 3:30 - 5.30 pm, Adam-von-Trott Hall)

Optimal use of MS cross-linking data in modelling biomolecular complexes by combining DISVIS and HADDOCK - Jörg Schaarschmidt

No requirements.

HDX-MS (Mon, 4th, 3.30 - 5.30 pm, Emmy-Noether Hall)

HDX-MS: what is it and what can it do for you? - Kasper D. Rand

Requirements: Bring your questions for Q/A session.

Xlink Analyzer (Sun, 3rd, 1.00 - 3.00 pm, Emmy-Noether Hall)

Xlink Analyzer: software for integrative analysis of cross-links and other restraints in the context of three-dimensional structures - Karol Kaszuba

Requirements:

For the tutorials, please install the USCF Chimera and the Xlink Analyzer plugin beforehand following the instructions at:

https://www.embl-hamburg.de/XlinkAnalyzer/documentation.html

Xlink Analyzer is available for download at:

https://www.embl-hamburg.de/XlinkAnalyzer/XlinkAnalyzer.html

RNPxl (Sun, 3rd, 3:30 - 5.30 pm, Emmy-Noether Hall)

RNPxl: Identifying peptide-nucleic acid cross-links using the OpenMS tool RNPxl - Timo Sachsenberg & Alexander Wulf

(This workshop is partially supported by de.NBI)

No requirements.